Champuru v1.0


Flot et al. (2006) Phase determination from direct sequencing of length-variable DNA regions Molecular Ecology Notes 6 (3), 627-630 link
Flot (2007) Champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths Molecular Ecology Notes 7 (6), 974-977 link

Forward sequence: (Max = 1500 bp)

Reverse sequence: (Max = 1500 bp)

Reverse-complement reverse sequence



For a quick feeling of how Champuru works, copy/paste ATSYKRMKY in the first field and WWKCTGAST in the second, then click 'Submit'.

And now, here is a 'real-life' example (original chromatograms: Forward and Reverse ).
Forward sequence: ATCGTGGGCGGCCGGCCCTGCCACAGACGGGGTTGTCACCCTCTGCGACGTGCCGTTCCAAGCAACTTAGGCAGGGCCCCTCCGCCTAGAAAGTGCTTCTCGCAACTACAACTCGCCGATGCAGGCATCGGAGATTTCAAATTTGAGCTCTTCCCGCTTCACTCGCCGTTACTGGGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTAATATGCTTAAATTCAGCGGGTAGCCTTGCCTGATCTGAGGTCTGGAAGGCGATTCCTTTTTTCCTTTGAGATGCCGCCACCGCTACCCGGCGGCAGCAGAAAAAAGAATCGAATGGAGAAAGATTTGTTCCGTCAAAGCGATAGAGCCGTGGCCGTTTGGGGTACATTGTTCTATGATCCCCGCGCGACACCGGATGTCGCTTGGCGGATCTTTCTCCCTGAATTTCAAGGGACGCGGTAAACCGACCGGTCGGGCCGAGCAGCACCAGGGCTGGCTAGCTAGCGCACGACCGGTCATCTCGACCGCGACCCTCAACGCCGCACGAACCCGTTCACGGCGGGCGCGYSYCSSSSCCMYMYSCKMYASASRSGGRSMMSRSGSRSRCGCGCRCRCGSRKWYKCRCRMKRKRKRTKTKWRWAKASACWCWSASASASAYRYKCYYSKGRGARMMCMMRAGMGCSMYWTKYGYKYWMARAKWYKMKRWKWYWCWSWRWWYTCYGCWWYTCACWCTWYWTMTCRSMMTCKMKCTGA
Reverse sequence: GTGCRMTMTCAACACMCSASTCTCGMRACRCATMKYGKGSGSSSSSSSCYSYSMCASASRSGGKKKTSWCMCYCTSYGMSRYGYSSYKYYMMRMRMMWYWKRSRSRGSSCCYCYSCSYMKARARWGYKYYTCKCRMMWMYAMMWCKCSSMKRYRSRSRYMKSRGAKWTYWMAWWTKWGMKCTYYYCSCKYYWCWCKCSSYKWYWSKGGGRRWMYYYKTKWKWKTYTYTTYYYCYSCKYWTWWWWATRYKYWWAWWYWSMGSGKRKMSYYKYSYSWKMTSWGRKSTSKRRRRSGMKWYYYYTTTTYYYYTKWGAKRYSSCSMCMSCKMYMCSSSGSSRSMRSARAAAARARWMKMRWRKRGARARAKWTKTKYYSYSWMARMGMKAKAGMSSYGKSSSYKTKKGGKRYAYWKTKYTMTRWKMYCCSCGCGMSACMSSRKRTSKCKYKKSGSRKMTYTYTCYCYSWRWWTYWMRRGRSRCGSKRWAMMSMSMSSKSKSGSSSMGMRSMRCMMSRGSKSKSKMKMKMKMGCRCRMSMSSKSWYMTCKMSMSCGMSMCYCWMMRCSSCRCRMRMMCSYKYWCRSSGSGSGCGCGTCCCGGCCCCATCCGCTACAGACGGGGACCAGGCGGACGCGCGCACGCGGATTCGCACGATGGATGTTTGAATAGACACTCAGACAGACATGCTCCTGGGAGAACCCAAGAGCGCCATTTGCGTTCAAAGATTCGATGATTCACTGAAT

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